Masahiro Sugimoto

Project Professor (Part-time)
Graduate School of Media and Governance
Short BiographyKeio University
Areas of ExpertiseBioinformatics
Selected PublicationsMy background is bioinformatics, metabolomics, data mining in
medical field, and software science/engineering.

Shinoda K, Sugimoto M, Tomita M, Ishihama Y.
Informatics for peptide retention properties in proteomic LC-MS.
Proteomics. 2008, 8, 787-98.

Matsubara Y, Kikuchi S, Sugimoto M, Oka K, Tomita M.
Algebraic method for the analysis of signaling crosstalk.
Artif Life. 2008, 14, 81-94.

Ishii K, Nakamura S, Morohashi M, Sugimoto M, Ohashi Y, Kikuchi S, Tomita M.
Comparison of metabolite production capability indices generated by network analysis methods.
Biosystems. 2008, 91, 166-70.

Shinoda K, Sugimoto M, Yachie N, Sugiyama N, Masuda T, Robert M, Soga T, Tomita M.
Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks.
J Proteome Res. 2006, 5, 3312-7.

Shinoda K, Yachie N, Masuda T, Sugiyama N, Sugimoto M, Soga T, Tomita M.
HybGFS: a hybrid method for genome-fingerprint scanning.
BMC Bioinformatics. 2006, 7, 479.

Kitayama T, Kinoshita A, Sugimoto M, Nakayama Y, Tomita M.
A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles.
Theor Biol Med Model. 2006, 3, 24.
Matsubara Y, Kikuchi S, Sugimoto M, Tomita M.

Parameter estimation for stiff equations of biosystems using radial basis function networks.
BMC Bioinformatics. 2006, 7, 230

Sugimoto M, Kikuchi S, Tomita M.
Reverse engineering of biochemical equations from time-course data by means of genetic programming.
Biosystems. 2005, 80, 155-64

Sugimoto M, Kikuchi S, Arita M, Soga T, Nishioka T, Tomita M.
Large-scale prediction of cationic metabolite identity and migration time in capillary electrophoresis mass spectrometry using artificial neural networks.
Anal Chem. 2005, 77, 78-84
Contact Information5322 Endo Fujisawa, Kanagawa 252-0882 Japan
Keio University Shonan Fujisawa Campus