Nozomu Yachie

Nozomu Yachie

Project Associate Professor
Graduate School of Media and Governance
Areas of ExpertiseSystems Biology, Bioinformatics
Selected Publications1. Soma A., Onodera A., Sugahara J., Kanai A., Yachie N., Tomita M., Kawamura F., Sekine Y. (2007) Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae, Science; 318(5849): 450-453
2. Watanabe Y., Kishi A., Yachie N., Kanai A., Tomita M. (2007) Computational analysis of microRNA-mediated antiviral defense in humans, FEBS Letters; 581(24): 4603-4610
3. Matsui M., Yachie N., Okada Y., Saito R., Tomita M. (2007) Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse, FEBS Letters; 581(22): 4184-4188
4. Sugahara J., Yachie N., Arakawa K., Tomita M. (2007) In Silico Screening of Archaeal tRNA-encoding Genes Having Multiple Introns with Bulge-Helix-Bulge Splicing Motifs, RNA; 13(5): 671-681
5. Yachie N., Sekiyama K., Sugahara J., Ohashi Y., Tomita M. (2007) Alignment-Based Approach for Durable Data Storage into Living Organisms, Biotechnology Progress; 23(2): 501-505
6. Negishi Y., Nakamura H., Yachie N., Saito R., Tomita M. (2007) eXpanda: an Integrated Platform for Network Analysis and Visualization, In Silico Biology; 7(2): 141-144
7. Yachie N., Arakawa K., Tomita M. (2006) On the Interplay of Gene Positioning and the Role of Rho-Independent Terminators in Escherichia coli, FEBS Letters; 580(30): 6909-6914
8. Shinoda K., Yachie N., Masuda T., Sugiyama N., Sugimoto M., Soga T., Tomita M. (2006) HybGFS: a hybrid method for genome-fingerprint scanning, BMC Bioinformatics; 7: 479
9. Shinoda K., Sugimoto M., Yachie N., Sugiyama N., Masuda T., Robert M., Soga T., Tomita M. (2006) Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks, Journal of Proteome Research; 5(12):3312-3317
10. Sugahara J., Yachie N., Sekine Y., Soma A., Matsui M., Tomita M., Kanai A. (2006) SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level, In Silico Biology; 6(5): 411-418
11. Yachie N., Numata K., Saito R., Kanai A., Tomita M. (2006) Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model, Gene; 372: 171-181
12. Watanabe Y., Yachie N., Numata K., Saito R., Kanai A., Tomita M. (2006) Computational analysis of microRNA target recognition in Caenorhabditis elegans, Gene; 365: 2-10
Home Pagehttp://web.sfc.keio.ac.jp/~nzm
Contact Information5322 Endo Fujisawa, Kanagawa 252-0882 Japan
Keio University Shonan Fujisawa Campus
nzm [ at ] sfc.keio.ac.jp
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